Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
230
total RNA-seq
188
ATAC-seq
177
single cell RNA-seq
56
snATAC-seq
47
WGBS
34
ChIP-seq
28
DNase-seq
16
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
407
Transcription
273
DNA accessibility
49
DNA methylation
34
DNA binding
6
3D chromatin structure
Target of assay
220
histone
histone modification
114
broad histone mark
106
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
139
May, 2020
134
May, 2022
87
May, 2021
82
February, 2023
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
41
September, 2018
July, 2019
27
June, 2019
21
August, 2017
11
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
June, 2018
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
360
bam
340
bigWig
329
fastq
235
tsv
153
zippedFastqFolder
71
bed narrowPeak
56
bigBed narrowPeak
30
bed broadPeak
30
bigBed broadPeak
27
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
2
tagAlign
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
785
Homo sapiens
Biosample type
1980
tissue
785
primary cell
542
cell line
169
in vitro differentiated cells
7
stem cell
Organ
320
epithelium
283
pancreas
19
connective tissue
14
kidney
14
vasculature
11
blood vessel
11
brain
8
blood
8
bodily fluid
8
liver
7
vein
3
eye
3
heart
2
musculature of body
1
bone element
1
bone marrow
Project
345
AMP
324
HPAP
115
T1D
1
ITG
Genome assembly (visualization)
344
hg19
301
GRCh38
Lab
340
AMP-T2D consortium
324
Klaus Kaestner, Upenn
120
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
July, 2019
target.investigated_as!
histone modification
other post-translational modification
BIOSAMPLE
ASSAY
785 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
+ See 71 more…
See all biosamples
Download