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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
71
ATAC-seq
70
ChIP-seq
69
single cell RNA-seq
47
WGBS
3
Hi-C
Assay category
150
Transcription
71
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
33
April, 2018
32
July, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
253
fastq
189
bam
187
bigWig
103
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
341
Homo sapiens
Biosample type
501
tissue
341
primary cell
16
cell line
3
in vitro differentiated cells
Organ
396
epithelium
341
pancreas
36
vasculature
31
blood vessel
28
kidney
22
vein
21
brain
20
connective tissue
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
bone element
1
bone marrow
1
pericardium
Project
189
AMP
152
HPAP
Genome assembly (visualization)
187
GRCh38
180
hg19
Lab
189
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2020
organ_slims!
bone element
BIOSAMPLE
ASSAY
341 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
52
35
13
12
31
1
pancreatic beta cell
21
23
13
12
16
1
pancreatic acinar cell
4
9
8
11
1
pancreatic ductal cell
4
4
13
10
pancreatic endocrine cell
23
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