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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
227
total RNA-seq
185
ATAC-seq
140
single cell RNA-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
16
pCHi-C
8
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
Assay category
369
Transcription
267
DNA accessibility
237
DNA binding
56
DNA methylation
8
3D chromatin structure
Target of assay
205
histone
205
histone modification
105
broad histone mark
100
narrow histone mark
28
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
30
June, 2019
29
July, 2019
11
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2023
1
November, 2018
Available data
557
bigWig
544
bam
361
fastq
257
bed narrowPeak
253
tsv
134
zippedFastqFolder
100
tagAlign
73
bigBed narrowPeak
42
bed broadPeak
42
bigBed broadPeak
32
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
953
Homo sapiens
Biosample type
2686
tissue
953
primary cell
570
cell line
279
in vitro differentiated cells
9
stem cell
Organ
377
epithelium
322
pancreas
36
vasculature
31
blood vessel
28
kidney
26
connective tissue
vein
21
brain
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
488
AMP
265
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
569
hg19
485
GRCh38
Lab
453
AMP-T2D consortium
265
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
September, 2020
organ_slims!
vein
BIOSAMPLE
ASSAY
953 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
37
33
12
31
1
Langerhans cell
45
48
pancreatic beta cell
13
20
22
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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