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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
total RNA-seq
69
single cell RNA-seq
68
ATAC-seq
47
WGBS
22
ChIP-seq
17
DNase-seq
7
Hi-C
5
RRBS
1
FAIRE-seq
Assay category
146
Transcription
86
DNA accessibility
52
DNA methylation
22
DNA binding
7
3D chromatin structure
Target of assay
64
histone
histone modification
33
narrow histone mark
31
broad histone mark
19
control
3
RNA binding protein
3
transcription factor
Date released
80
May, 2022
40
September, 2018
37
February, 2023
33
April, 2018
32
July, 2018
September, 2020
15
August, 2017
15
June, 2019
12
July, 2019
11
October, 2019
7
August, 2020
6
February, 2021
5
December, 2019
5
September, 2017
4
November, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
June, 2018
1
March, 2020
Available data
181
fastq
169
bam
161
bigWig
115
tsv
80
zippedFastqFolder
41
bed narrowPeak
41
bigBed narrowPeak
17
bed bed3+
17
bed broadPeak
17
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tagAlign
1
tar
Organism
313
Homo sapiens
Biosample type
313
primary cell
15
tissue
6
in vitro differentiated cells
3
cell line
Organ
313
epithelium
264
pancreas
26
connective tissue
20
kidney
19
vasculature
18
brain
15
blood vessel
10
liver
8
blood
8
bodily fluid
7
heart
7
vein
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
180
AMP
133
HPAP
Genome assembly (visualization)
158
hg19
156
GRCh38
Lab
180
AMP-T2D consortium
133
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
4
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
September, 2020
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
313 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
37
12
33
31
6
1
pancreatic beta cell
20
12
22
16
6
1
pancreatic acinar cell
4
11
9
1
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
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