Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
905
ChIP-seq
228
ATAC-seq
180
single cell RNA-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
RNA microarray
Assay category
1205
Transcription
905
DNA binding
262
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
236
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
82
November, 2017
81
February, 2023
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
November, 2019
38
March, 2020
24
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1865
bam
1750
bigWig
1051
tsv
949
bed narrowPeak
560
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2448
Homo sapiens
Biosample type
2457
tissue
613
primary cell
508
cell line
259
in vitro differentiated cells
9
stem cell
Organ
544
connective tissue
485
adipose tissue
460
pancreas
358
liver
286
heart
235
brain
231
kidney
128
blood vessel
128
vasculature
86
limb
74
bone element
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2360
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1642
GRCh38
1541
hg19
Lab
2105
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed broadPeak
month_released!
November, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
2457 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
RNA microarray
tissue
islet of Langerhans
273
71
49
6
7
4
2
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
1
1
kidney
49
27
75
64
6
1
1
1
heart left ventricle
3
35
2
18
4
1
1
1
+ See 151 more…
See all biosamples
Download