Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
59
single cell RNA-seq
50
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
110
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
4
July, 2019
4
October, 2019
3
December, 2019
3
February, 2021
Available data
153
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
294
Homo sapiens
Biosample type
294
tissue
28
primary cell
4
cell line
Organ
546
connective tissue
505
pancreas
487
adipose tissue
360
liver
313
heart
294
kidney
262
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
247
AMP
47
KPMP
Genome assembly (visualization)
165
GRCh38
92
hg19
Lab
142
Katalin Susztak, Upenn
105
AMP-T2D consortium
47
KPMP
Audit category:
2
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
csv
BIOSAMPLE
ASSAY
294 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
59
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
See all biosamples
Download