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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
205
ATAC-seq
16
WGBS
9
RRBS
Assay category
216
DNA binding
205
DNA accessibility
25
DNA methylation
Target of assay
206
histone modification
205
histone
156
narrow histone mark
49
broad histone mark
10
transcription factor
6
RNA binding protein
Date released
103
October, 2019
64
August, 2021
63
February, 2023
49
August, 2017
40
May, 2024
38
May, 2022
27
May, 2020
19
July, 2019
19
November, 2019
8
February, 2021
6
November, 2018
6
October, 2017
2
March, 2020
1
April, 2019
1
November, 2017
Available data
1903
bam
1769
bigWig
1073
tsv
980
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
446
Homo sapiens
Biosample type
446
tissue
192
primary cell
104
in vitro differentiated cells
29
cell line
2
stem cell
Organ
92
heart
75
brain
67
kidney
67
pancreas
65
liver
39
blood vessel
39
vasculature
37
artery
27
eye
16
musculature of body
12
epithelium
9
limb
8
bone element
8
skeleton
5
adipose tissue
5
connective tissue
3
spleen
1
nerve
1
pericardium
1
pituitary gland
Project
444
AMP
2
T1D
Genome assembly (visualization)
341
GRCh38
291
hg19
Lab
304
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
446 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
RRBS
tissue
kidney
2
64
1
liver
44
20
1
islet of Langerhans
20
37
1
left cardiac atrium
40
coronary artery
36
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