Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
614
ChIP-seq
215
ATAC-seq
176
DNase-seq
16
WGBS
16
small RNA-seq
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
614
DNA binding
395
DNA accessibility
25
DNA methylation
Target of assay
521
histone modification
520
histone
266
narrow histone mark
254
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
181
August, 2017
170
May, 2020
162
June, 2019
158
October, 2019
116
July, 2018
93
May, 2019
69
July, 2019
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
38
May, 2022
38
November, 2019
36
December, 2017
23
November, 2018
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1903
bam
1769
bigWig
1073
tsv
980
bed narrowPeak
560
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1945
Homo sapiens
Biosample type
1951
tissue
597
primary cell
473
cell line
176
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
412
pancreas
266
liver
202
brain
193
heart
156
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
58
musculature of body
31
nerve
30
eye
18
ureter
16
spleen
12
epithelium
8
skeleton
1
pericardium
1
pituitary gland
Project
1949
AMP
2
T1D
Genome assembly (visualization)
1836
GRCh38
1726
hg19
Lab
1808
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
1951 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
3
2
islet of Langerhans
260
29
40
1
1
6
1
liver
147
82
20
2
1
1
kidney
20
64
13
1
1
bone tissue
58
+ See 140 more…
See all biosamples
Download