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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
13
single cell RNA-seq
1
snATAC-seq
Assay category
72
Transcription
1
DNA accessibility
Date released
57
August, 2021
7
May, 2022
5
February, 2021
4
February, 2023
Available data
1824
bam
1703
bigWig
1073
tsv
915
bed narrowPeak
496
bigBed narrowPeak
376
fastq
238
tagAlign
211
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
73
Homo sapiens
Biosample type
73
tissue
2
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
73
AMP
Genome assembly (visualization)
1
hg19
Lab
57
Katalin Susztak, Upenn
10
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
6
audit script error
audit.ERROR.category!
inconsistent ontology term
lab.title!
Stephen Parker, UMich
month_released!
April, 2019
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
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