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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
979
total RNA-seq
877
ChIP-seq
173
DNase-seq
167
single cell RNA-seq
146
ATAC-seq
27
WGBS
23
pCHi-C
22
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1162
Transcription
877
DNA binding
345
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
606
histone modification
605
histone
316
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
214
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
110
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
76
July, 2019
74
October, 2018
66
May, 2022
60
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1869
bam
1742
bigWig
1069
tsv
854
bed narrowPeak
535
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
16
txt
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2461
Homo sapiens
Biosample type
2470
tissue
1032
primary cell
504
cell line
279
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
504
pancreas
487
adipose tissue
361
liver
313
heart
262
brain
157
kidney
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2373
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1723
hg19
1718
GRCh38
Lab
2261
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
Maike Sander, UCSD
organ_slims!
artery
BIOSAMPLE
ASSAY
2470 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
71
1
6
67
4
7
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
2
1
20
3
1
1
1
1
kidney
27
13
53
1
1
heart left ventricle
3
35
3
18
2
4
1
1
1
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