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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
831
ChIP-seq
563
total RNA-seq
225
ATAC-seq
180
single cell RNA-seq
175
DNase-seq
21
WGBS
20
pCHi-C
18
snATAC-seq
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
831
DNA binding
757
Transcription
422
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
238
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
161
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
76
February, 2023
67
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
39
November, 2019
38
May, 2021
36
March, 2020
25
November, 2018
22
February, 2020
22
October, 2017
19
April, 2020
17
February, 2021
14
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1382
bam
1288
bigWig
950
bed narrowPeak
615
tsv
550
bigBed narrowPeak
310
fastq
230
tagAlign
209
bed broadPeak
198
bed bed3+
173
bigBed broadPeak
67
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2079
Homo sapiens
Biosample type
2087
tissue
775
primary cell
565
cell line
139
in vitro differentiated cells
9
stem cell
Organ
connective tissue
487
adipose tissue
454
pancreas
361
liver
313
heart
299
kidney
262
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
2017
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1376
GRCh38
1252
hg19
Lab
1787
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
organ_slims!
adrenal gland
connective tissue
BIOSAMPLE
ASSAY
2087 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
70
281
39
6
1
4
1
3
1
1
4
liver
145
167
20
1
2
3
1
1
1
1
kidney
27
49
75
64
13
6
1
1
1
heart left ventricle
35
3
2
18
3
4
1
1
1
left cardiac atrium
40
18
1
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