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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
908
total RNA-seq
877
ChIP-seq
222
ATAC-seq
178
single cell RNA-seq
173
DNase-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1102
Transcription
877
DNA binding
427
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
606
histone modification
605
histone
316
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
227
August, 2021
214
October, 2019
193
May, 2020
160
June, 2019
July, 2018
110
May, 2019
82
November, 2017
80
April, 2019
76
July, 2019
74
October, 2018
66
May, 2022
60
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1753
bam
1626
bigWig
953
tsv
918
bed narrowPeak
535
bigBed narrowPeak
375
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2484
Homo sapiens
Biosample type
2493
tissue
990
primary cell
504
cell line
273
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
487
adipose tissue
385
pancreas
361
liver
313
heart
299
kidney
262
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2396
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1677
GRCh38
1608
hg19
Lab
2141
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
month_released!
July, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
2493 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
islet of Langerhans
172
71
68
6
1
7
4
3
1
1
4
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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