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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1012
total RNA-seq
698
ChIP-seq
243
ATAC-seq
171
single cell RNA-seq
150
DNase-seq
27
WGBS
21
pCHi-C
18
snATAC-seq
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
RNA microarray
Assay category
1195
Transcription
698
DNA binding
414
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
156
October, 2019
137
June, 2019
120
July, 2018
87
May, 2019
80
April, 2019
80
February, 2023
74
October, 2018
66
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
36
March, 2020
24
November, 2018
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1679
bam
1569
bigWig
1048
tsv
778
bed narrowPeak
444
bigBed narrowPeak
365
fastq
177
bed bed3+
176
bed broadPeak
148
bigBed broadPeak
120
tagAlign
73
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2382
Homo sapiens
Biosample type
2390
tissue
627
primary cell
567
cell line
260
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
505
pancreas
487
adipose tissue
361
liver
313
heart
299
kidney
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2312
AMP
47
KPMP
31
T1D
Genome assembly (visualization)
1654
GRCh38
1598
hg19
Lab
2057
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
lab.title!
Xin Sun, UCSD
organ_slims!
brain
epithelium
BIOSAMPLE
ASSAY
2390 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
292
71
67
6
1
4
7
3
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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