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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
692
ChIP-seq
222
ATAC-seq
178
single cell RNA-seq
164
DNase-seq
28
snATAC-seq
23
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
2
MeRIP-seq
Assay category
1222
Transcription
692
DNA binding
417
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
606
histone modification
605
histone
316
narrow histone mark
289
broad histone mark
control
86
transcription factor
27
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
255
August, 2017
227
August, 2021
192
October, 2019
170
May, 2020
160
June, 2019
120
July, 2018
90
May, 2019
76
July, 2019
70
November, 2017
66
April, 2019
66
May, 2022
60
February, 2023
47
September, 2023
45
October, 2018
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
36
December, 2017
November, 2018
22
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1719
bigWig
1686
bam
1069
tsv
901
bed narrowPeak
518
bigBed narrowPeak
287
fastq
199
bed broadPeak
188
bed bed3+
186
tagAlign
162
bigBed broadPeak
73
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2402
Homo sapiens
Biosample type
2410
tissue
1001
primary cell
373
cell line
244
in vitro differentiated cells
8
stem cell
Organ
521
connective tissue
469
pancreas
462
adipose tissue
308
liver
297
heart
293
kidney
235
brain
117
blood vessel
117
vasculature
104
limb
77
musculature of body
74
bone element
artery
56
eye
32
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
11
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2313
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1768
GRCh38
1704
hg19
Lab
2060
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2018
organ_slims!
artery
target.investigated_as!
control
BIOSAMPLE
ASSAY
2410 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
RNA microarray
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
292
58
68
6
1
7
4
3
1
1
2
adipose tissue
382
1
3
1
3
liver
167
98
20
1
1
3
1
1
1
kidney
49
21
75
64
13
6
1
1
1
heart left ventricle
3
29
2
18
3
1
4
1
1
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