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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
41
ChIP-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
WGBS
1
RRBS
Assay category
96
Transcription
41
DNA binding
35
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
5
March, 2020
3
February, 2020
3
July, 2019
1
April, 2019
1
October, 2019
Available data
220
bigWig
bam
187
bed narrowPeak
168
tsv
90
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
181
Homo sapiens
Biosample type
181
tissue
Organ
230
pancreas
202
kidney
181
heart
179
epithelium
108
liver
85
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
39
artery
39
musculature of body
29
brain
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
Project
181
AMP
Genome assembly (visualization)
75
GRCh38
5
hg19
Lab
141
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bam
csv
month_released!
November, 2017
BIOSAMPLE
ASSAY
181 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
WGBS
RRBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
2
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
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