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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
17
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
22
October, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
May, 2019
Available data
65
bam
43
bed narrowPeak
42
bigWig
35
bed bed3+
35
bed broadPeak
bigBed broadPeak
35
bigBed narrowPeak
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
36
Homo sapiens
Biosample type
36
tissue
Organ
713
pancreas
635
liver
585
connective tissue
454
adipose tissue
334
epithelium
256
heart
223
kidney
150
vasculature
149
blood vessel
117
artery
75
bone element
68
blood
68
bodily fluid
61
brain
53
eye
36
limb
25
musculature of body
21
embryo
20
lung
17
nerve
16
skeleton
16
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
36
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
36
AMP-T2D consortium
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bedMethyl
bigBed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
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