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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
total RNA-seq
12
ATAC-seq
1
ChIP-seq
1
pCHi-C
Assay category
62
Transcription
12
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
66
February, 2021
8
February, 2023
1
May, 2021
1
October, 2019
Available data
66
bam
58
bigWig
58
tsv
8
bed narrowPeak
4
bed bed3
4
txt
Organism
76
Homo sapiens
Biosample type
75
tissue
1
primary cell
Organ
859
pancreas
705
liver
663
connective tissue
488
adipose tissue
428
epithelium
380
heart
328
kidney
281
brain
233
vasculature
229
blood vessel
141
artery
120
limb
83
musculature of body
75
bone element
69
blood
69
bodily fluid
60
eye
43
nerve
31
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
75
AMP
1
T1D
Genome assembly (visualization)
70
hg19
66
GRCh38
Lab
75
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bedMethyl
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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primary cell
megakaryocyte
1
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