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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
476
ChIP-seq
180
total RNA-seq
22
ATAC-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
476
DNA binding
184
Transcription
23
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
283
transcription factor
104
control
86
histone modification
85
histone
82
recombinant protein
53
RNA binding protein
52
narrow histone mark
33
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
50
November, 2018
40
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
December, 2018
1
February, 2020
Available data
680
bam
608
bigWig
464
fastq
426
bed narrowPeak
358
bigBed narrowPeak
165
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
695
Homo sapiens
Biosample type
358
tissue
311
cell line
15
in vitro differentiated cells
11
primary cell
Organ
840
pancreas
695
liver
656
connective tissue
487
adipose tissue
412
epithelium
358
heart
252
kidney
236
brain
219
vasculature
217
blood vessel
137
artery
86
limb
75
bone element
57
eye
42
blood
42
bodily fluid
42
musculature of body
41
nerve
31
embryo
20
lung
18
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
695
AMP
Genome assembly (visualization)
546
hg19
481
GRCh38
Lab
655
AMP-T2D consortium
40
Karen Mohlke, UNC
Bing Ren, UCSD
Audit category:
27
inconsistent control
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed broadPeak
lab.title!
Bing Ren, UCSD
month_released!
December, 2018
BIOSAMPLE
ASSAY
695 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
145
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
302
5
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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