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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
29
ATAC-seq
18
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
52
Transcription
47
DNA accessibility
Date released
May, 2021
41
May, 2020
24
May, 2022
23
February, 2023
16
January, 2021
Available data
65
bam
41
bigWig
41
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
104
Homo sapiens
Biosample type
50
tissue
49
primary cell
5
cell line
Organ
50
pancreas
8
blood
8
bodily fluid
Project
80
T1D
24
AMP
Genome assembly (visualization)
59
hg19
41
GRCh38
Lab
3181
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
104
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
6
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed broadPeak
month_released!
May, 2021
month_released!!
May, 2021
BIOSAMPLE
ASSAY
104 results
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total RNA-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
11
29
6
pancreas
4
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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cell line
EndoC_BH1
3
2
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