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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
32
ChIP-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
32
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
582
February, 2021
333
May, 2020
325
August, 2017
305
August, 2021
May, 2021
282
October, 2019
200
May, 2022
194
February, 2023
162
July, 2018
139
November, 2017
113
May, 2019
106
July, 2019
74
April, 2019
73
September, 2018
61
October, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
May, 2024
24
February, 2020
19
April, 2020
19
October, 2017
16
January, 2019
16
January, 2021
15
May, 2023
15
November, 2018
11
September, 2017
9
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
7
June, 2019
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
2
June, 2018
1
August, 2022
Available data
123
tsv
95
bed narrowPeak
64
xls
57
txt
49
bam
36
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
304
Homo sapiens
Biosample type
229
tissue
42
in vitro differentiated cells
30
cell line
4
primary cell
Organ
130
kidney
92
heart
24
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
epithelium
2
artery
2
pancreas
1
adipose tissue
Project
305
AMP
Genome assembly (visualization)
105
GRCh38
49
hg19
Lab
149
AMP-T2D consortium
128
Katalin Susztak, Upenn
24
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed broadPeak
month_released!
May, 2021
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
305 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
7
2
1
1
H1-hESC
8
HEK293T
2
primary cell
hepatocyte
4
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