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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
201
DNA binding
23
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
173
histone
173
histone modification
107
narrow histone mark
66
broad histone mark
31
control
Date released
84
October, 2019
79
November, 2017
28
May, 2019
18
July, 2019
13
October, 2017
11
February, 2020
2
March, 2020
1
February, 2023
Available data
241
bam
220
bigWig
201
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
236
Homo sapiens
Biosample type
226
tissue
10
primary cell
Organ
844
pancreas
727
liver
656
connective tissue
487
adipose tissue
412
epithelium
358
heart
254
kidney
236
brain
219
vasculature
217
blood vessel
137
artery
86
limb
75
bone element
69
blood
69
bodily fluid
57
eye
musculature of body
41
nerve
31
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
236
AMP
Genome assembly (visualization)
169
GRCh38
125
hg19
Lab
236
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
2
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed broadPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
236 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
1
temporal lobe
15
1
1
substantia nigra
15
1
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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