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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
133
Transcription
31
DNA accessibility
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
306
May, 2020
215
August, 2017
209
August, 2021
180
May, 2021
178
February, 2021
162
July, 2018
162
May, 2022
130
February, 2023
114
October, 2019
93
November, 2017
87
July, 2019
59
September, 2020
49
April, 2018
47
September, 2023
44
March, 2020
27
September, 2018
23
February, 2018
22
February, 2020
22
May, 2019
20
December, 2017
20
November, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
November, 2018
14
May, 2023
13
October, 2018
11
October, 2017
9
January, 2019
8
December, 2019
8
November, 2020
7
August, 2020
7
January, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
June, 2019
4
October, 2022
3
August, 2018
2
June, 2018
1
August, 2022
Available data
142
bam
129
tsv
121
bigWig
45
fastq
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
178
Homo sapiens
Biosample type
67
tissue
56
cell line
47
primary cell
8
in vitro differentiated cells
Organ
454
connective tissue
adipose tissue
58
bone element
54
artery
54
blood vessel
54
heart
54
vasculature
8
kidney
6
epithelium
6
pancreas
2
liver
Project
133
AMP
45
HPAP
Genome assembly (visualization)
121
hg19
115
GRCh38
Lab
133
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
32
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed narrowPeak
organ_slims!
adipose tissue
target.investigated_as!
other context
BIOSAMPLE
ASSAY
178 results
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Clear Filters
total RNA-seq
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone tissue
58
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
2
HepG2
1
iPSC derived cell line
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
adipocyte
4
4
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