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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
73
single cell RNA-seq
54
total RNA-seq
25
ChIP-seq
16
snATAC-seq
3
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
pCHi-C
1
small RNA-seq
Assay category
128
Transcription
92
DNA accessibility
25
DNA binding
3
DNA methylation
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
130
August, 2021
47
September, 2023
23
April, 2019
19
April, 2020
October, 2019
14
May, 2023
10
July, 2019
8
February, 2021
3
December, 2019
2
May, 2019
1
March, 2020
Available data
162
bed narrowPeak
109
bam
104
bigWig
98
bigBed narrowPeak
77
bed bed3+
77
bed broadPeak
bigBed broadPeak
64
xls
62
txt
17
tsv
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
hic
Organism
256
Homo sapiens
Biosample type
247
tissue
8
primary cell
2
cell line
Organ
841
pancreas
721
liver
653
connective tissue
487
adipose tissue
382
epithelium
350
heart
237
kidney
178
vasculature
176
blood vessel
161
brain
113
artery
75
bone element
69
blood
69
bodily fluid
55
musculature of body
36
eye
31
embryo
24
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
vein
Project
191
AMP
47
KPMP
19
LungMap
Genome assembly (visualization)
101
GRCh38
31
hg19
Lab
142
Katalin Susztak, Upenn
47
AMP-T2D consortium
47
KPMP
19
Xin Sun, UCSD
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
7
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed broadPeak
month_released!
October, 2019
BIOSAMPLE
ASSAY
257 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
FAIRE-seq
Hi-C
pCHi-C
small RNA-seq
tissue
kidney
75
64
49
23
6
1
1
1
lung
9
10
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
+ See 3 more…
primary cell
kidney epithelial cell
1
2
1
renal cortical epithelial cell
1
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
cell line
HEK293T
2
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