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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
4
total RNA-seq
1
pCHi-C
Assay category
12
DNA accessibility
4
Transcription
Date released
8
February, 2021
8
February, 2023
1
May, 2021
Available data
66
bam
bigWig
58
tsv
8
bed narrowPeak
4
bed bed3
4
txt
Organism
17
Homo sapiens
Biosample type
16
tissue
1
primary cell
Organ
295
pancreas
189
epithelium
168
liver
167
heart
151
kidney
105
connective tissue
81
vasculature
80
blood vessel
65
adipose tissue
63
brain
56
artery
55
eye
31
limb
27
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
vein
6
embryo
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
16
AMP
1
T1D
Genome assembly (visualization)
12
hg19
8
GRCh38
Lab
16
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigWig
xls
organ_slims!
gonad
BIOSAMPLE
ASSAY
17 results
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ATAC-seq
total RNA-seq
pCHi-C
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
primary cell
megakaryocyte
1
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