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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
1
RRBS
1
WGBS
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
5
March, 2020
3
February, 2020
2
July, 2019
Available data
184
bam
bigWig
132
bed narrowPeak
82
bigBed narrowPeak
70
tsv
16
bed broadPeak
16
bigBed broadPeak
12
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
83
Homo sapiens
Biosample type
65
tissue
10
cell line
8
primary cell
Organ
295
pancreas
215
kidney
189
epithelium
168
liver
167
heart
105
connective tissue
81
vasculature
80
blood vessel
65
adipose tissue
63
brain
56
artery
55
eye
31
limb
27
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
vein
6
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
83
AMP
Genome assembly (visualization)
43
GRCh38
12
hg19
Lab
83
AMP-T2D consortium
Audit category:
1
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
83 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
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