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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
440
bam
424
bigWig
401
tsv
44
fastq
11
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
488
Homo sapiens
Biosample type
486
tissue
2
primary cell
1
in vitro differentiated cells
Organ
861
pancreas
788
liver
659
connective tissue
489
adipose tissue
417
epithelium
357
heart
254
kidney
253
brain
229
vasculature
225
blood vessel
139
artery
90
limb
75
bone element
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
31
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
489
AMP
Genome assembly (visualization)
424
hg19
422
GRCh38
Lab
489
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
files.file_type!
ibed
month_released!
June, 2019
organ_slims!
blood
BIOSAMPLE
ASSAY
489 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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