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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
36
DNase-seq
35
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
103
DNA binding
69
DNA accessibility
42
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
89
histone
89
histone modification
64
narrow histone mark
25
broad histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
67
October, 2019
37
June, 2019
32
February, 2023
28
May, 2019
25
November, 2017
19
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2017
Available data
248
bam
234
bed narrowPeak
226
bigWig
133
bigBed narrowPeak
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
30
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
226
Homo sapiens
Biosample type
200
tissue
26
primary cell
Organ
846
pancreas
704
liver
643
connective tissue
482
adipose tissue
426
epithelium
381
heart
331
kidney
229
vasculature
224
blood vessel
165
brain
135
artery
121
limb
75
bone element
72
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
226
AMP
Genome assembly (visualization)
153
hg19
139
GRCh38
Lab
226
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
226 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
6
14
1
1
1
islet of Langerhans
2
14
2
4
retina
3
3
15
temporal lobe
15
1
1
pigmented layer of retina
2
12
+ See 57 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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