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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
68
DNA binding
7
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
RNA binding protein
Date released
57
August, 2017
18
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
436
bam
420
bigWig
tsv
39
fastq
8
tagAlign
7
bed narrowPeak
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
83
Homo sapiens
Biosample type
83
tissue
1
in vitro differentiated cells
Organ
558
liver
479
pancreas
311
kidney
308
epithelium
255
brain
209
heart
179
connective tissue
162
vasculature
158
blood vessel
114
limb
84
adipose tissue
82
artery
78
musculature of body
59
blood
59
bodily fluid
55
eye
38
nerve
24
spleen
22
vein
19
embryo
19
lung
18
ureter
17
bone element
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
84
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
files.file_type!
tsv
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
white adipose tissue
12
omental fat pad
8
1
2
adipose tissue
2
3
3
1
in vitro differentiated cells
white fat cell
1
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