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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
Assay category
77
DNA binding
Target of assay
77
histone
77
histone modification
39
narrow histone mark
38
broad histone mark
21
control
6
transcription factor
5
RNA binding protein
1
chromatin remodeller
Date released
21
October, 2019
21
September, 2018
14
August, 2017
12
December, 2017
3
August, 2021
2
May, 2019
2
November, 2017
1
June, 2019
1
May, 2021
Available data
77
bam
74
bigWig
72
bed narrowPeak
49
fastq
27
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
3
bed bed3+
Organism
77
Homo sapiens
Biosample type
64
primary cell
13
in vitro differentiated cells
Organ
185
brain
139
pancreas
102
liver
95
heart
77
epithelium
71
vasculature
70
blood vessel
70
connective tissue
49
limb
32
adipose tissue
28
kidney
26
musculature of body
24
nerve
20
artery
15
vein
10
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
77
AMP
Genome assembly (visualization)
74
hg19
72
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
pancreatic acinar cell
8
pancreatic alpha cell
7
pancreatic beta cell
7
+ See 6 more…
in vitro differentiated cells
hepatocyte
12
pancreatic PP cell
1
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