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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
36
DNase-seq
29
ATAC-seq
14
total RNA-seq
6
Hi-C
6
RRBS
4
pCHi-C
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
66
DNA accessibility
36
DNA binding
15
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
29
histone
29
histone modification
16
broad histone mark
13
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
41
June, 2019
27
February, 2023
26
August, 2017
21
October, 2019
7
July, 2019
7
May, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
85
bed narrowPeak
66
bigWig
55
bam
49
bed broadPeak
45
bigBed narrowPeak
37
bed bed3+
36
bigBed broadPeak
15
tagAlign
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
134
Homo sapiens
Biosample type
125
tissue
9
primary cell
Organ
616
liver
487
pancreas
313
epithelium
312
kidney
258
brain
219
heart
188
connective tissue
167
vasculature
162
blood vessel
114
limb
89
adipose tissue
83
artery
78
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
19
embryo
19
lung
18
ureter
17
bone element
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
134
AMP
Genome assembly (visualization)
93
hg19
45
GRCh38
Lab
134
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
islet of Langerhans
2
1
14
4
muscle of leg
7
12
1
retina
3
15
muscle of arm
17
+ See 5 more…
primary cell
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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