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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
444
ChIP-seq
189
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
444
DNA binding
193
Transcription
28
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
53
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
30
August, 2021
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
December, 2018
1
February, 2020
Available data
609
bigWig
579
bam
440
bed narrowPeak
387
fastq
358
bigBed narrowPeak
174
tsv
63
bed broadPeak
63
bigBed broadPeak
58
tagAlign
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
681
Homo sapiens
Biosample type
340
cell line
315
tissue
14
in vitro differentiated cells
12
primary cell
Organ
811
pancreas
681
liver
632
connective tissue
466
adipose tissue
412
epithelium
368
heart
262
kidney
252
brain
213
vasculature
209
blood vessel
132
artery
104
limb
81
musculature of body
71
bone element
60
eye
36
blood
36
bodily fluid
32
nerve
26
embryo
20
lung
20
vein
18
ureter
14
spleen
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
681
AMP
Genome assembly (visualization)
610
hg19
529
GRCh38
Lab
614
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
files.file_type!
txt
month_released!
December, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
681 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
318
14
1
1
1
2
2
1
tissue
liver
102
167
20
2
3
1
1
1
1
1
right lobe of liver
7
3
1
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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