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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
117
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
91
histone
91
histone modification
58
broad histone mark
33
narrow histone mark
22
control
4
RNA binding protein
4
transcription factor
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
309
May, 2021
291
October, 2019
252
August, 2021
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
118
bam
95
bed narrowPeak
95
bigBed narrowPeak
95
bigWig
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
122
Homo sapiens
Biosample type
120
tissue
2
primary cell
Organ
50
blood vessel
50
vasculature
28
brain
21
heart
7
limb
7
musculature of body
7
pancreas
5
artery
2
epithelium
2
kidney
Project
122
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
117
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
xls
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 7 more…
primary cell
kidney epithelial cell
2
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