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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
35
DNase-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
130
DNA binding
52
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
54
histone
54
histone modification
51
transcription factor
34
broad histone mark
23
control
20
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
73
October, 2019
31
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
1
March, 2020
Available data
173
bam
145
bed narrowPeak
145
bigWig
137
bigBed narrowPeak
60
fastq
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
195
Homo sapiens
Biosample type
126
tissue
61
cell line
8
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
283
brain
267
kidney
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
187
AMP
8
T1D
Genome assembly (visualization)
150
hg19
149
GRCh38
Lab
187
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
xls
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
1
4
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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