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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
17
RRBS
Assay category
75
DNA methylation
60
DNA accessibility
52
Transcription
Date released
134
May, 2022
21
July, 2019
19
September, 2020
7
November, 2018
6
August, 2017
Available data
3022
bam
2819
bigWig
1754
bed narrowPeak
1303
fastq
1292
tsv
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
187
Homo sapiens
Biosample type
161
primary cell
25
tissue
1
cell line
Organ
86
pancreas
85
epithelium
7
heart
4
musculature of body
3
kidney
3
liver
2
adipose tissue
2
brain
2
connective tissue
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
153
HPAP
34
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
153
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
July, 2018
BIOSAMPLE
ASSAY
187 results
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Clear Filters
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac muscle cell
1
+ See 7 more…
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
cell line
HepG2
1
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