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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
DNase-seq
28
ChIP-seq
5
Hi-C
Assay category
191
DNA accessibility
28
DNA binding
5
3D chromatin structure
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
183
June, 2019
20
August, 2017
10
October, 2019
6
November, 2017
4
July, 2019
1
November, 2020
Available data
3180
bam
2977
bigWig
1754
bed narrowPeak
tsv
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
224
Homo sapiens
Biosample type
192
tissue
30
primary cell
2
cell line
Organ
77
kidney
45
musculature of body
39
brain
35
limb
29
heart
19
epithelium
18
ureter
14
vasculature
13
blood vessel
12
pancreas
8
connective tissue
4
artery
4
eye
4
vein
3
liver
2
adipose tissue
2
nerve
Project
224
AMP
Genome assembly (visualization)
201
hg19
197
GRCh38
Lab
224
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
tsv
BIOSAMPLE
ASSAY
224 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
skeletal muscle tissue
13
brain
12
+ See 42 more…
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cardiac fibroblast
2
+ See 16 more…
cell line
Panc1
1
1
See all biosamples
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