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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
108
ChIP-seq
2
ATAC-seq
Assay category
189
DNA accessibility
108
DNA binding
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
170
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2926
bam
2733
bigWig
1561
bed narrowPeak
1306
tsv
1095
fastq
947
bigBed narrowPeak
388
tagAlign
297
bed broadPeak
260
bigBed broadPeak
247
bed bed3+
73
zippedFastqFolder
29
bed bedMethyl
29
bigBed bedMethyl
19
txt
12
bed bed3
12
bedpe bed3+
12
hic
8
csv
6
bed bedgraph
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
291
Homo sapiens
Biosample type
212
tissue
59
cell line
25
primary cell
1
in vitro differentiated cells
Organ
77
kidney
63
liver
47
brain
45
musculature of body
35
limb
29
heart
epithelium
21
pancreas
18
ureter
16
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
297
AMP
Genome assembly (visualization)
279
hg19
259
GRCh38
Lab
295
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
month_released!
February, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
297 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
skeletal muscle tissue
13
+ See 45 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
2
astrocyte of the hippocampus
1
brain pericyte
1
+ See 4 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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