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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
7
DNase-seq
2
ATAC-seq
Assay category
12
DNA binding
9
DNA accessibility
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
12
August, 2017
4
June, 2019
2
November, 2018
1
March, 2019
1
October, 2017
1
October, 2019
Available data
635
bam
570
bigWig
466
fastq
378
tsv
200
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
15
Homo sapiens
Biosample type
20
tissue
1
cell line
Organ
77
kidney
63
liver
47
brain
45
musculature of body
35
limb
29
heart
21
epithelium
21
pancreas
18
ureter
16
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
21
AMP
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
19
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
21 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
islet of Langerhans
6
2
pancreas
6
2
body of pancreas
4
cell line
Panc1
1
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