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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
1
Hi-C
Assay category
8
Transcription
1
3D chromatin structure
Date released
6
February, 2021
1
March, 2019
1
November, 2018
1
September, 2018
Available data
3180
bam
2977
bigWig
1690
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
34
bed bedMethyl
34
bigBed bedMethyl
19
txt
17
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
9
Homo sapiens
Biosample type
7
tissue
2
primary cell
Organ
5
kidney
1
liver
1
pancreas
Project
9
AMP
Genome assembly (visualization)
1
hg19
Lab
8
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
audit script error
audit.ERROR.category!
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
Maike Sander, UCSD
BIOSAMPLE
ASSAY
9 results
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single cell RNA-seq
Hi-C
tissue
kidney
5
islet of Langerhans
1
liver
1
primary cell
pancreatic cell
2
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