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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
Hi-C
1
pCHi-C
Assay category
12
3D chromatin structure
Date released
8
March, 2020
2
August, 2021
1
August, 2018
1
November, 2019
1
October, 2019
Available data
2651
bam
2469
bigWig
1730
bed narrowPeak
1302
fastq
1018
bigBed narrowPeak
935
tsv
386
tagAlign
318
bed broadPeak
281
bigBed broadPeak
265
bed bed3+
153
zippedFastqFolder
71
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
10
bed bed3
5
hdf5
4
tar
cool
2
bed bedgraph
2
csv
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
10
tissue
1
cell line
1
in vitro differentiated cells
1
primary cell
Organ
3
heart
3
pancreas
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
epithelium
1
vein
Project
13
AMP
Genome assembly (visualization)
11
hg19
Lab
11
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
cool
month_released!
February, 2021
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
13 results
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Clear Filters
Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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