Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
69
single cell RNA-seq
41
total RNA-seq
32
ATAC-seq
16
DNase-seq
6
Hi-C
1
FAIRE-seq
Assay category
110
Transcription
80
DNA binding
49
DNA accessibility
6
3D chromatin structure
Target of assay
73
histone
73
histone modification
37
narrow histone mark
36
broad histone mark
5
RNA binding protein
5
transcription factor
2
control
1
chromatin remodeller
Date released
61
September, 2018
33
April, 2018
32
July, 2018
25
October, 2019
17
August, 2017
15
June, 2019
14
December, 2017
7
August, 2020
7
July, 2019
6
November, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
May, 2021
3
October, 2022
3
September, 2020
2
May, 2019
2
October, 2018
1
June, 2018
1
March, 2020
Available data
252
fastq
250
bam
241
bigWig
127
bed narrowPeak
119
tsv
80
zippedFastqFolder
71
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
245
Homo sapiens
Biosample type
229
primary cell
14
in vitro differentiated cells
2
cell line
Organ
624
liver
560
connective tissue
538
pancreas
426
adipose tissue
245
epithelium
220
brain
220
heart
156
vasculature
152
blood vessel
116
kidney
90
limb
85
artery
62
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
25
embryo
18
ureter
16
spleen
16
vein
6
eye
1
pericardium
1
pituitary gland
Project
232
AMP
13
HPAP
Genome assembly (visualization)
234
GRCh38
229
hg19
Lab
232
AMP-T2D consortium
13
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
3
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
May, 2021
BIOSAMPLE
ASSAY
245 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
7
12
10
13
1
pancreatic beta cell
7
12
10
10
1
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
11
4
5
1
endothelial cell of umbilical vein
12
2
1
1
+ See 18 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
1
See all biosamples
Download