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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
Hi-C
1
pCHi-C
Assay category
11
3D chromatin structure
Date released
6
March, 2020
3
October, 2022
August, 2021
1
August, 2018
1
November, 2019
1
October, 2019
Available data
2864
bam
2711
bigWig
1449
bed narrowPeak
1344
fastq
1259
tsv
876
bigBed narrowPeak
365
tagAlign
272
bed broadPeak
235
bigBed broadPeak
218
bed bed3+
153
zippedFastqFolder
32
bed bedMethyl
32
bigBed bedMethyl
19
txt
13
hic
12
bed bed3
12
bedpe bed3+
8
csv
6
bed bedgraph
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
Organism
12
Homo sapiens
Biosample type
8
tissue
3
primary cell
1
in vitro differentiated cells
Organ
5
pancreas
4
epithelium
3
heart
blood vessel
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
liver
1
vein
Project
9
AMP
3
HPAP
Genome assembly (visualization)
11
hg19
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
3
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2021
organ_slims!
blood vessel
limb
BIOSAMPLE
ASSAY
12 results
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Hi-C
pCHi-C
tissue
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
islet of Langerhans
1
+ See 2 more…
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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