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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
RRBS
16
WGBS
3
Hi-C
Assay category
32
DNA methylation
3
3D chromatin structure
Date released
21
July, 2019
7
November, 2018
6
August, 2017
1
October, 2019
Available data
2996
bam
2823
bigWig
1622
bed narrowPeak
1382
tsv
1341
fastq
936
bigBed narrowPeak
389
tagAlign
302
bed broadPeak
265
bigBed broadPeak
255
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
15
hic
14
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
35
Homo sapiens
Biosample type
24
tissue
9
primary cell
2
cell line
Organ
7
epithelium
7
heart
7
pancreas
5
brain
4
liver
4
musculature of body
vasculature
3
blood vessel
3
connective tissue
3
kidney
2
adipose tissue
2
spleen
1
eye
1
limb
1
pericardium
Project
35
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
organ_slims!
bone marrow
vasculature
BIOSAMPLE
ASSAY
35 results
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Clear Filters
RRBS
WGBS
Hi-C
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 10 more…
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
cardiac muscle cell
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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