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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
DNase-seq
6
ChIP-seq
Assay category
15
DNA accessibility
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
13
June, 2019
4
November, 2017
4
October, 2019
Available data
227
bigWig
225
bam
223
fastq
121
tsv
112
bed narrowPeak
80
zippedFastqFolder
68
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
7
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
21
Homo sapiens
Biosample type
21
primary cell
Organ
77
kidney
63
liver
38
brain
35
limb
32
musculature of body
29
heart
21
epithelium
18
ureter
16
vasculature
13
blood vessel
7
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
0
spinal cord
Project
21
AMP
Genome assembly (visualization)
19
GRCh38
15
hg19
Lab
21
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
21 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
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