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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
Assay category
81
DNA binding
Target of assay
357
transcription factor
348
histone
348
histone modification
221
broad histone mark
127
narrow histone mark
81
RNA binding protein
81
recombinant protein
29
chromatin remodeller
4
other context
4
other post-translational modification
Date released
28
November, 2017
21
November, 2018
11
October, 2018
6
January, 2019
4
December, 2017
4
May, 2019
3
April, 2019
2
December, 2018
2
June, 2019
Available data
102
bigWig
101
bed narrowPeak
99
bam
90
bigBed narrowPeak
89
fastq
9
bed broadPeak
bigBed broadPeak
2
bed bed3+
1
tar
Organism
81
Homo sapiens
Biosample type
57
cell line
20
tissue
2
in vitro differentiated cells
2
primary cell
Organ
51
liver
10
blood
10
bodily fluid
6
pancreas
5
adipose tissue
5
connective tissue
5
heart
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
eye
Project
81
AMP
Genome assembly (visualization)
80
hg19
78
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed broadPeak
ibed
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
cell line
HepG2
47
GM12878
10
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
subcutaneous adipose tissue
2
ascending aorta
1
+ See 6 more…
in vitro differentiated cells
hepatocyte
2
primary cell
cardiac muscle cell
1
retinal pigment epithelial cell
1
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