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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
176
ChIP-seq
89
total RNA-seq
5
ATAC-seq
2
WGBS
1
FAIRE-seq
Assay category
193
DNA accessibility
176
DNA binding
89
Transcription
2
DNA methylation
Target of assay
126
histone modification
125
histone
63
narrow histone mark
61
broad histone mark
49
transcription factor
10
RNA binding protein
3
chromatin remodeller
1
control
Date released
507
February, 2021
334
November, 2017
272
August, 2017
252
May, 2020
230
May, 2021
193
October, 2019
188
June, 2019
158
July, 2018
95
May, 2019
85
July, 2019
80
November, 2018
72
September, 2018
70
December, 2017
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
30
December, 2018
26
January, 2019
20
May, 2022
19
November, 2019
14
October, 2017
13
March, 2020
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
September, 2020
2
February, 2023
2
June, 2018
Available data
474
bam
460
bigWig
330
bed narrowPeak
287
fastq
230
bigBed narrowPeak
224
bed broadPeak
216
bed bed3+
198
bigBed broadPeak
89
tsv
85
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
Organism
454
Homo sapiens
Biosample type
340
tissue
72
primary cell
48
in vitro differentiated cells
Organ
163
pancreas
77
kidney
70
connective tissue
46
musculature of body
32
epithelium
31
limb
30
brain
29
heart
20
liver
18
adipose tissue
18
ureter
6
eye
6
vasculature
5
blood vessel
2
artery
Project
460
AMP
Genome assembly (visualization)
435
GRCh38
435
hg19
Lab
460
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
460 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
1
27
89
1
heart
18
liver
17
muscle of arm
17
pancreas
2
12
+ See 42 more…
primary cell
skeletal muscle myoblast
2
15
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
cardiac muscle cell
1
2
+ See 18 more…
in vitro differentiated cells
adipocyte
1
47
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