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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
16
single cell RNA-seq
2
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
75
Transcription
3
DNA accessibility
Date released
57
August, 2021
7
May, 2022
6
February, 2021
6
February, 2023
1
November, 2018
1
October, 2022
1
September, 2018
Available data
2712
bigWig
2653
bam
1625
bed narrowPeak
1327
tsv
947
bigBed narrowPeak
944
fastq
322
tagAlign
297
bed broadPeak
260
bigBed broadPeak
238
bed bed3+
76
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
13
hic
12
bed bed3
12
bedpe bed3+
8
csv
6
bed bedgraph
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
78
Homo sapiens
Biosample type
74
tissue
2
in vitro differentiated cells
2
primary cell
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
liver
1
musculature of body
Project
79
AMP
Genome assembly (visualization)
3
hg19
Lab
57
Katalin Susztak, Upenn
14
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
6
audit script error
audit.ERROR.category!
inconsistent ontology term
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
79 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
primary cell
pancreatic cell
2
cell line
MIN6
1
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