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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
27
snATAC-seq
12
single cell RNA-seq
6
WGBS
1
Hi-C
Assay category
34
DNA binding
27
DNA accessibility
12
Transcription
6
DNA methylation
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
324
November, 2017
287
August, 2017
90
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
45
February, 2021
44
April, 2018
44
July, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
2
June, 2018
1
March, 2019
Available data
562
bam
537
bigWig
515
tsv
80
fastq
53
bed narrowPeak
30
bigBed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
80
Homo sapiens
Biosample type
45
primary cell
28
cell line
7
tissue
Organ
27
blood
27
bodily fluid
7
spleen
6
epithelium
6
pancreas
1
liver
Project
45
HPAP
35
AMP
Genome assembly (visualization)
30
GRCh38
30
hg19
Lab
45
Klaus Kaestner, Upenn
35
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent control
audit.ERROR.category!
inconsistent ontology term
organ_slims!
ureter
BIOSAMPLE
ASSAY
80 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
Hi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
cell line
GM12878
27
HepG2
1
tissue
spleen
7
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