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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
13
single cell RNA-seq
2
ATAC-seq
1
MPRA
Assay category
72
Transcription
2
DNA accessibility
Date released
57
August, 2021
6
February, 2023
6
May, 2022
5
February, 2021
1
October, 2022
Available data
3072
bam
2842
bigWig
1628
bed narrowPeak
1441
tsv
1285
fastq
925
bigBed narrowPeak
380
tagAlign
273
bed broadPeak
249
bigBed broadPeak
234
bed bed3+
153
zippedFastqFolder
75
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
hic
14
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
74
Homo sapiens
Biosample type
72
tissue
2
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
musculature of body
Project
75
AMP
Genome assembly (visualization)
2
hg19
Lab
57
Katalin Susztak, Upenn
10
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
5
audit script error
audit.ERROR.category!
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
organ_slims!
blood
musculature of body
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
MIN6
1
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