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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
78
total RNA-seq
77
ATAC-seq
43
ChIP-seq
6
snATAC-seq
4
MeRIP-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
DNase-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
184
Transcription
84
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
14
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
2
nucleotide modification
1
RNA binding protein
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
194
February, 2023
192
June, 2019
162
July, 2018
160
May, 2022
117
May, 2019
106
July, 2019
90
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
November, 2020
8
December, 2018
8
December, 2019
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
127
tsv
108
bed narrowPeak
64
xls
57
txt
55
bam
52
bigWig
24
tagAlign
6
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
vcf
Organism
325
Homo sapiens
Biosample type
233
tissue
42
in vitro differentiated cells
41
cell line
10
primary cell
Organ
130
kidney
92
heart
35
liver
11
connective tissue
8
embryo
6
blood vessel
6
pancreas
6
vasculature
4
epithelium
2
artery
1
adipose tissue
Project
326
AMP
Genome assembly (visualization)
111
GRCh38
66
hg19
Lab
155
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
organ_slims!
blood
BIOSAMPLE
ASSAY
326 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
MeRIP-seq
STARR-seq
Hi-C
Capture-C
DNase-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
7
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
primary cell
osteoblast
4
1
1
hepatocyte
4
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