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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
44
total RNA-seq
39
ChIP-seq
31
ATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
142
Transcription
39
DNA binding
31
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
581
February, 2021
400
November, 2017
382
August, 2017
333
May, 2020
305
May, 2021
257
October, 2019
184
August, 2021
176
June, 2019
142
February, 2023
130
July, 2018
120
May, 2022
115
May, 2019
94
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
47
September, 2023
46
March, 2020
40
May, 2024
40
September, 2020
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
2
December, 2019
1
August, 2018
1
August, 2022
1
June, 2018
1
May, 2023
1
October, 2022
Available data
142
tsv
83
bam
63
bigWig
58
bed narrowPeak
20
tagAlign
3
bedpe bed3+
2
bed bed3+
2
hic
1
vcf
Organism
222
Homo sapiens
Biosample type
140
tissue
42
in vitro differentiated cells
41
cell line
Organ
92
heart
41
pancreas
35
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
epithelium
2
artery
2
kidney
1
adipose tissue
Project
223
AMP
Genome assembly (visualization)
95
hg19
76
GRCh38
Lab
184
AMP-T2D consortium
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
organ_slims!
epithelium
BIOSAMPLE
ASSAY
223 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
islet of Langerhans
20
19
2
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
7
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
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